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Biologically harmonized neurointerfaces: from invasive electrodes to autologous organoids

Invasive neurointerfaces (Utah array, Neuropixels, Neuralink) demonstrate remarkable outcomes in short-term experiments; however, their durability and biocompatibility remain limited. The formation of glial scars, mechanical mismatch, and chronic inflammation reduce signal quality and constrain neuroplasticity. This article discusses the prospects of transitioning from rigid electrode-based systems to biological solutions, including autologous neural organoids and hybrid tissue interfaces, which are capable of integrating into the brain and supporting natural mechanisms of self-learning. Keywords: Neurointerfaces, BCI, brain, biohybrid

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Biologically harmonized neurointerfaces: from invasive electrodes to autologous organoids

Abstract

Invasive neurointerfaces (Utah array, Neuropixels, Neuralink) demonstrate remarkable outcomes in short-term experiments; however, their durability and biocompatibility remain limited. The formation of glial scars, mechanical mismatch, and chronic inflammation reduce signal quality and constrain neuroplasticity. This article discusses the prospects of transitioning from rigid electrode-based systems to biological solutions, including autologous neural organoids and hybrid tissue interfaces, which are capable of integrating into the brain and supporting natural mechanisms of self-learning.

Keywords: Neurointerfaces, BCI, brain, biohybrid

Introduction

Neurointerfaces have become a key area of neuroscience and bioengineering, opening new prospects for restoring lost functions in patients  with paralysis, neurodegenerative disorders, or sensory deficits. The first clinical  platforms (BrainGate, Utah array, Neuralink) have confirmed the feasibility of  directly recording and decoding neural activity to control external devices  [Hochberg et al., 2012; Musk & Neuralink, 2019]. However, the issue of long term stability remains unresolved. 

Limitations of Modern Invasive Interfaces 

Contemporary invasive neurointerfaces (Utah array, Neuropixels, Neuralink) have  demonstrated significant success in short-term experiments: patients with severe  paralysis can control a cursor, type text, or interact with external devices directly  through neural activity decoding [Hochberg et al., 2012; Musk & Neuralink, 2019].  However, the long-term stability of such interfaces remains a serious challenge. 

Studies have shown that any implanted electrode is perceived by the brain as a  foreign body. This triggers a cascade of immune responses, including microglial and  astrocytic activation, glial scar formation, and encapsulation of the implantation site  [Polikov et al., 2005; Campbell & Wu, 2018]. These processes are accompanied by a  reduction in neuronal density near the electrode, an increase in impedance, and a  decline in the signal-to-noise ratio. A key factor is the mechanical mismatch: soft brain  tissue has a Young’s modulus on the order of tens of kilopascals, whereas rigid  electrode materials reach hundreds of gigapascals [Gilletti & Muthuswamy, 2006]. As a result, natural micromotions of the brain (breathing, vascular pulsation) lead to  chronic tissue trauma. 

Clinical observations confirm these limitations. The Utah array can provide stable  recordings for 1–2 years; however, the number of functional channels gradually  decreases over time [Barrese et al., 2013; Prasad et al., 2014]. The new generation of  devices, such as Neuropixels 2.0, demonstrates months of stable performance in  animal models [Steinmetz et al., 2021], yet the prospects for long-term (>10 years)  application in humans remain unclear. In 2024, Neuralink reported retraction of a  portion of polymer threads in its first implanted patient, further highlighting the  unresolved issue of chronic biocompatibility [Neuralink Clinical Update, 2024]. 

Impact on Neuroplasticity 

The brain is not a static “wire” but a dynamic, self-learning network shaped by millions  of years of evolution. Neuroplasticity is mediated through fine mechanisms of synaptic  remodeling, including Hebbian plasticity and spike-timing dependent plasticity (STDP),  where millisecond-scale correlations of activity and endogenous rhythms (theta,  gamma, alpha) determine the strengthening or weakening of synaptic connections  [Markram et al., 2012]. 

Invasive electrodes disrupt this harmony. First, the area surrounding the electrode  becomes a “dead zone”: neurons degenerate, connections are severed, and local  plasticity is diminished. Second, the very nature of electrical stimulation is coarse:  instead of molecularly precise neurotransmitter signals, a relatively “noisy” current is  delivered, simultaneously activating hundreds of cells. The effect may be noticeable  in the short term (e.g., partial “restoration of vision” in visual prostheses), but in the long  term, it does not sustain the physiological process of brain self-learning and, on the  contrary, constrains it. 

Experience with deep brain stimulation (DBS) in Parkinson’s disease illustrates this  duality. On the one hand, patients achieve lasting relief of motor symptoms,  indicating that stimulation can indeed induce plastic reorganization [Temel et al.,  2006]. On the other hand, chronic stimulation may produce cognitive side effects— such as reduced cognitive flexibility, mood alterations, or even the emergence of  pathological behavioral patterns [Krack et al., 2010]. This suggests that imposing an  external rhythm interferes with the endogenous processes of brain self-regulation. 

Thus, the problem with invasive interfaces lies not only in their limited survivability but  also in their potential to suppress the deeper capacity for neuroplasticity. If the brain  can teach itself through its intrinsic oscillations and rhythms, then a rigid implant  delivering a “monotypic” signal is more likely to reduce this potential than to unlock it. 

In response to these challenges, research efforts are increasingly shifting toward soft  and biocompatible interfaces, as well as non-invasive modulation methods—such as  transcranial magnetic and electrical stimulation (TMS, tDCS, tACS), ultrasound,  optogenetics, and magnetoelectric nanoparticles. These technologies are aimed not  at replacing the brain’s natural rhythms, but at their coordinated adjustment, thereby  supporting—and in some cases enhancing—neuroplasticity.

Prospects of Biohybrid Interfaces 

Given the fundamental limitations of current invasive neurointerfaces, it becomes  evident that further progress is impossible without a paradigm shift. The problem lies in  the mismatch between the scale and nature of implants and biological tissue. The  brain is an organ shaped by millions of years of evolution, functioning at the level of  individual cells, synapses, and molecular interactions. Its signaling dynamics are  determined by millisecond-scale coincidences of activity, phase synchronization, and  fine chemical modulation by neurotransmitters. Under such conditions, a massive  electrode or a polymer thread transmitting a relatively “coarse” electrical signal  essentially remains a mechanical crutch. The effect may be transient (e.g., visual  prostheses or motor interfaces), but in the long run biology prevails: gliosis forms  around the contact, neurons degenerate, and plasticity declines. 

One potential solution is the transition from foreign materials to biologically  harmonized interfaces based on autologous neural organoids. Organoids derived  from induced pluripotent stem cells (iPSC) have demonstrated the ability to form  functional neural networks with oscillatory activity comparable to that of the cortex  [Trujillo et al., 2019; Sharf et al., 2022]. Upon transplantation, such structures integrate  into the brains of animals: angiogenesis occurs, new synaptic connections are  formed, and organoids begin to resonate with the endogenous rhythms of the host  tissue. 

Figure 1 Neural organoid in vitro. (A) Bright-field image showing the spherical  structure of a neural organoid. (B) Transmission electron microscopy image  illustrating cellular organization and peripheral layering. Scale bar = 10 μm.

The use of autologous cells eliminates the problem of immune rejection and allows the  organoid to become part of the existing neural network. Unlike electrodes, which  induce local neuronal death, an organoid may provide a novel substrate for  neuroplasticity—additional resources for memory, learning, and network  reorganization. Such an interface ceases to be a “mechanical adversary” and  instead becomes a “biological ally”: it does not impose artificial patterns on the brain  but expands its intrinsic repertoire. 

Thus, the future of neurotechnology may lie not in the attempt to “wire the brain” but  in the creation of biohybrid systems that constitute an extension of neural tissue itself.  This marks a transition from a temporary and mechanical crutch to a technology that  organically supports the brain’s natural rhythms, its capacity for development, and its  ability to self-learn. 

Conclusion

The brain is neither wiring nor a mechanical device but the outcome of millions of  years of evolution—a biological system operating at the level of individual cells,  molecules, and rhythms. Attempts to “connect” foreign constructs that have not  been part of its evolutionary trajectory inevitably yield only short-term effects. In  experimental settings, invasive neurointerfaces appear impressive: individuals  deprived of movement or vision regain the ability to control a cursor, operate a  prosthesis, or perceive stimuli again. Yet, the long-term prospects of such systems are  limited: glial scarring develops at the site of contact, neurons either degenerate or  withdraw from the electrode, signals weaken, and with them the potential for  plasticity diminishes. 

The thickness of a metallic or polymer conductor is incompatible with the scale of  synaptic interactions, where impulse transmission occurs through molecular and even  quantum-like mechanisms. Consequently, signals delivered by electrodes remain  “coarse” relative to the fine dynamics of neural networks: they activate hundreds of  cells simultaneously without reproducing the authentic language of the brain. This  approach can be likened to a crutch: it compensates for a lost function but never  becomes a natural extension of the organism. 

Looking ahead, the future of neurointerfaces lies not in imposing coarse signals upon  the brain but in creating solutions that align with its intrinsic rhythms and exploit its  innate capacity for self-learning. A particularly promising direction is the development  of biohybrid interfaces based on autologous neural organoids derived from a  patient’s own cells. Unlike metal or silicon, such structures are capable of integrating  into brain tissue, forming new connections, and expanding the substrate for  neuroplasticity. 

Thus, the central paradigm is shifting from the “mechanical adversary” to the  “biological ally.” The neurointerface of the future is not a foreign wire but a  biologically harmonized extension of the nervous system, one that sustains the brain’s  natural rhythms and amplifies its capacity for growth and self-directed development.

References 

  1. Brain micromotion around implants in the rodent somatosensory cortex
    Aaron Gilletti, Jit Muthuswamy
    https://pubmed.ncbi.nlm.nih.gov/16921202
  2. An Integrated Brain-Machine Interface Platform With Thousands of Channels
    Elon Musk, Neuralink
    https://pmc.ncbi.nlm.nih.gov/articles/PMC6914248
  3. Response of brain tissue to chronically implanted neural electrodes
    Vadim S. Polikov, Patrick A. Tresco, William M. Reichert
    https://pubmed.ncbi.nlm.nih.gov/16198003
  4. Spike-timing-dependent plasticity: a comprehensive overview
    H. Markram, W. Gerstner, P. J. Sjöström
    https://pubmed.ncbi.nlm.nih.gov/22807913
  5. Behavioural changes after bilateral subthalamic stimulation in advanced Parkinson disease: a systematic review
    Yasin Temel
    https://pubmed.ncbi.nlm.nih.gov/16621661
  6. Deep brain stimulation: from neurology to psychiatry
    Paul Krack
    https://pubmed.ncbi.nlm.nih.gov/20832128
  7. Functional neuronal circuitry and oscillatory dynamics in human brain organoids
    Tal Sharf
    https://www.nature.com/articles/s41467-022-32115-4

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